TASK_LOCUS3978 protein (Taenia asiatica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TASK_LOCUS3978

B-block_TFIIIC domain-containing protein. (2129 aa)

Predicted Functional Partners:

TASK_LOCUS9544

0.977

TASK_LOCUS7238

0.897

TASK_LOCUS6191

0.889

TASK_LOCUS1754

0.725

TASK_LOCUS5864

0.725

TASK_LOCUS5225

0.703

TASK_LOCUS6896

0.677

TASK_LOCUS604

0.658

TASK_LOCUS6735

0.654

TASK_LOCUS1186

0.648

Your Current Organism:

Taenia asiatica

NCBI taxonomy Id: 60517
Other names: Asian tapeworm, T. asiatica, Taenia saginata asiatica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TASK_LOCUS1186	TASK_LOCUS1754	A0A0R3VV03	A0A0R3VWF9	Uncharacterized protein.	Uncharacterized protein.	0.986
TASK_LOCUS1186	TASK_LOCUS3978	A0A0R3VV03	A0A0R3W2E3	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.648
TASK_LOCUS1186	TASK_LOCUS5225	A0A0R3VV03	A0A0R3W552	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TASK_LOCUS1186	TASK_LOCUS5864	A0A0R3VV03	A0A0R3W6M4	Uncharacterized protein.	Uncharacterized protein.	0.995
TASK_LOCUS1186	TASK_LOCUS604	A0A0R3VV03	A0A0R3VTM5	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.998
TASK_LOCUS1186	TASK_LOCUS6191	A0A0R3VV03	A0A0R3W7E2	Uncharacterized protein.	Myb_DNA-bind_7 domain-containing protein.	0.956
TASK_LOCUS1186	TASK_LOCUS6735	A0A0R3VV03	A0A0R3W8N3	Uncharacterized protein.	Uncharacterized protein.	0.992
TASK_LOCUS1186	TASK_LOCUS6896	A0A0R3VV03	A0A0R3W909	Uncharacterized protein.	Uncharacterized protein.	0.995
TASK_LOCUS1186	TASK_LOCUS7238	A0A0R3VV03	A0A0R3W9T0	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.956
TASK_LOCUS1186	TASK_LOCUS9544	A0A0R3VV03	A0A158RAK1	Uncharacterized protein.	Uncharacterized protein.	0.738
TASK_LOCUS1754	TASK_LOCUS1186	A0A0R3VWF9	A0A0R3VV03	Uncharacterized protein.	Uncharacterized protein.	0.986
TASK_LOCUS1754	TASK_LOCUS3978	A0A0R3VWF9	A0A0R3W2E3	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.725
TASK_LOCUS1754	TASK_LOCUS5225	A0A0R3VWF9	A0A0R3W552	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.963
TASK_LOCUS1754	TASK_LOCUS5864	A0A0R3VWF9	A0A0R3W6M4	Uncharacterized protein.	Uncharacterized protein.	0.969
TASK_LOCUS1754	TASK_LOCUS604	A0A0R3VWF9	A0A0R3VTM5	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.925
TASK_LOCUS1754	TASK_LOCUS6191	A0A0R3VWF9	A0A0R3W7E2	Uncharacterized protein.	Myb_DNA-bind_7 domain-containing protein.	0.998
TASK_LOCUS1754	TASK_LOCUS6735	A0A0R3VWF9	A0A0R3W8N3	Uncharacterized protein.	Uncharacterized protein.	0.906
TASK_LOCUS1754	TASK_LOCUS6896	A0A0R3VWF9	A0A0R3W909	Uncharacterized protein.	Uncharacterized protein.	0.977
TASK_LOCUS1754	TASK_LOCUS7238	A0A0R3VWF9	A0A0R3W9T0	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.999
TASK_LOCUS1754	TASK_LOCUS9544	A0A0R3VWF9	A0A158RAK1	Uncharacterized protein.	Uncharacterized protein.	0.888