Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIO12639.1 | SIO12651.1 | SAMN05444168_2820 | SAMN05444168_2821 | Cystathionine beta-lyase. | Hypothetical protein. | 0.648 |
SIO12639.1 | SIO12662.1 | SAMN05444168_2820 | SAMN05444168_2822 | Cystathionine beta-lyase. | acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.560 |
SIO12639.1 | rimO | SAMN05444168_2820 | SAMN05444168_2824 | Cystathionine beta-lyase. | SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.442 |
SIO12651.1 | SIO12639.1 | SAMN05444168_2821 | SAMN05444168_2820 | Hypothetical protein. | Cystathionine beta-lyase. | 0.648 |
SIO12651.1 | SIO12662.1 | SAMN05444168_2821 | SAMN05444168_2822 | Hypothetical protein. | acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.639 |
SIO12651.1 | SIO12679.1 | SAMN05444168_2821 | SAMN05444168_2823 | Hypothetical protein. | 2-keto-3-deoxygluconate kinase. | 0.410 |
SIO12651.1 | rimO | SAMN05444168_2821 | SAMN05444168_2824 | Hypothetical protein. | SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.503 |
SIO12662.1 | SIO12639.1 | SAMN05444168_2822 | SAMN05444168_2820 | acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | Cystathionine beta-lyase. | 0.560 |
SIO12662.1 | SIO12651.1 | SAMN05444168_2822 | SAMN05444168_2821 | acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | Hypothetical protein. | 0.639 |
SIO12662.1 | SIO12679.1 | SAMN05444168_2822 | SAMN05444168_2823 | acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 2-keto-3-deoxygluconate kinase. | 0.531 |
SIO12662.1 | rimO | SAMN05444168_2822 | SAMN05444168_2824 | acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.483 |
SIO12679.1 | SIO12651.1 | SAMN05444168_2823 | SAMN05444168_2821 | 2-keto-3-deoxygluconate kinase. | Hypothetical protein. | 0.410 |
SIO12679.1 | SIO12662.1 | SAMN05444168_2823 | SAMN05444168_2822 | 2-keto-3-deoxygluconate kinase. | acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.531 |
SIO12679.1 | rimO | SAMN05444168_2823 | SAMN05444168_2824 | 2-keto-3-deoxygluconate kinase. | SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.816 |
rimO | SIO12639.1 | SAMN05444168_2824 | SAMN05444168_2820 | SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | Cystathionine beta-lyase. | 0.442 |
rimO | SIO12651.1 | SAMN05444168_2824 | SAMN05444168_2821 | SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | Hypothetical protein. | 0.503 |
rimO | SIO12662.1 | SAMN05444168_2824 | SAMN05444168_2822 | SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | acetyl-CoA acetyltransferase /3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.483 |
rimO | SIO12679.1 | SAMN05444168_2824 | SAMN05444168_2823 | SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 2-keto-3-deoxygluconate kinase. | 0.816 |