STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO22024.1Membrane-bound inhibitor of C-type lysozyme. (126 aa)    
Predicted Functional Partners:
SIO46803.1
Phage integrase family protein.
  
     0.693
SIO22038.1
Hypothetical protein.
       0.650
SIO48155.1
YXWGXW repeat-containing protein.
  
     0.641
SIO17064.1
Tetratricopeptide repeat-containing protein.
  
     0.585
SIO06285.1
Uncharacterized membrane protein YhfC.
  
     0.579
SIN92827.1
YXWGXW repeat-containing protein.
  
     0.578
SIO22064.1
Heat shock protein HslJ.
 
   
 0.553
SIN97425.1
Predicted NTP pyrophosphohydrolase, NUDIX family.
  
     0.530
SIO53509.1
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains.
  
     0.530
SIN92190.1
Hypothetical protein.
  
     0.524
Your Current Organism:
Paraburkholderia phenazinium
NCBI taxonomy Id: 60549
Other names: ATCC 33666, BCRC 17398, Burkholderia phenazinium, CCUG 20836, CCUG 46044, CFBP 4793, CIP 106502, DSM 10684, JCM 10564, LMG 2247, LMG:2247, NCIB 11027, NCIB:11027, NCIMB 11027, P. phenazinium, Pseudomonas phenazinium
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