STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO50436.1ATP-binding cassette, subfamily B. (601 aa)    
Predicted Functional Partners:
SIO48436.1
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39.
 
 
0.950
SIO11297.1
Probable Rubsico expression protein CbbX.
   
 0.911
SIN88720.1
ATP-binding cassette, subfamily B.
  
 
0.887
SIN93876.1
ATP-binding cassette, subfamily B, RaxB.
 
 
0.876
SIO49474.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.803
SIN94240.1
Acetoin utilization deacetylase AcuC.
  
 0.713
SIO48788.1
ABC-2 type transport system ATP-binding protein.
  
 
0.711
SIO44064.1
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
    
 
 0.707
SIN79011.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
   
 0.704
SIN86212.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
   
 0.704
Your Current Organism:
Paraburkholderia phenazinium
NCBI taxonomy Id: 60549
Other names: ATCC 33666, BCRC 17398, Burkholderia phenazinium, CCUG 20836, CCUG 46044, CFBP 4793, CIP 106502, DSM 10684, JCM 10564, LMG 2247, LMG:2247, NCIB 11027, NCIB:11027, NCIMB 11027, P. phenazinium, Pseudomonas phenazinium
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