STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO57018.1Putative transport protein. (529 aa)    
Predicted Functional Partners:
SIO57024.1
Phosphate acetyltransferase.
 
     0.665
SIO57014.1
Hypothetical protein.
       0.481
SIO49053.1
Hypothetical protein.
  
     0.465
SIO27121.1
Aspartate 4-decarboxylase.
 
    0.429
SIO57025.1
Glycine/D-amino acid oxidase.
       0.422
SIO57032.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
       0.422
SIO57036.1
Amino acid ABC transporter membrane protein, PAAT family.
       0.422
Your Current Organism:
Paraburkholderia phenazinium
NCBI taxonomy Id: 60549
Other names: ATCC 33666, BCRC 17398, Burkholderia phenazinium, CCUG 20836, CCUG 46044, CFBP 4793, CIP 106502, DSM 10684, JCM 10564, LMG 2247, LMG:2247, NCIB 11027, NCIB:11027, NCIMB 11027, P. phenazinium, Pseudomonas phenazinium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.