TRIM3 protein (Chlorocebus sabaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRIM3

Tripartite motif containing 3. (744 aa)

Predicted Functional Partners:

TRIM44

0.679

ACTN4

0.630

RPS27A

0.499

PLEK

0.499

ENSCSAP00000017575

0.499

ENSCSAP00000017765

0.499

ENSCSAP00000009182

0.461

UBE2D1

0.457

UBE2D4

0.457

ENSCSAP00000012800

0.457

Your Current Organism:

Chlorocebus sabaeus

NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN4	TRIM3	ENSCSAP00000000379	ENSCSAP00000000666	Actinin alpha 4.	Tripartite motif containing 3.	0.630
ENSCSAP00000009182	ENSCSAP00000017575	ENSCSAP00000009182	ENSCSAP00000017575	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.632
ENSCSAP00000009182	ENSCSAP00000017765	ENSCSAP00000009182	ENSCSAP00000017765	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.632
ENSCSAP00000009182	RPS27A	ENSCSAP00000009182	ENSCSAP00000010276	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.632
ENSCSAP00000009182	TRIM3	ENSCSAP00000009182	ENSCSAP00000000666	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Tripartite motif containing 3.	0.461
ENSCSAP00000009182	UBE2D1	ENSCSAP00000009182	ENSCSAP00000003550	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.434
ENSCSAP00000012800	ENSCSAP00000017575	ENSCSAP00000012800	ENSCSAP00000017575	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.632
ENSCSAP00000012800	ENSCSAP00000017765	ENSCSAP00000012800	ENSCSAP00000017765	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.632
ENSCSAP00000012800	RPS27A	ENSCSAP00000012800	ENSCSAP00000010276	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.632
ENSCSAP00000012800	TRIM3	ENSCSAP00000012800	ENSCSAP00000000666	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Tripartite motif containing 3.	0.457
ENSCSAP00000012800	UBE2D1	ENSCSAP00000012800	ENSCSAP00000003550	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.932
ENSCSAP00000012800	UBE2D4	ENSCSAP00000012800	ENSCSAP00000011554	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin conjugating enzyme E2 D4 (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.901
ENSCSAP00000017575	ENSCSAP00000009182	ENSCSAP00000017575	ENSCSAP00000009182	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.632
ENSCSAP00000017575	ENSCSAP00000012800	ENSCSAP00000017575	ENSCSAP00000012800	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.632
ENSCSAP00000017575	TRIM3	ENSCSAP00000017575	ENSCSAP00000000666	Ubiquitin-like domain-containing protein.	Tripartite motif containing 3.	0.499
ENSCSAP00000017575	UBE2D1	ENSCSAP00000017575	ENSCSAP00000003550	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.700
ENSCSAP00000017575	UBE2D4	ENSCSAP00000017575	ENSCSAP00000011554	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 D4 (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.632
ENSCSAP00000017765	ENSCSAP00000009182	ENSCSAP00000017765	ENSCSAP00000009182	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.632
ENSCSAP00000017765	ENSCSAP00000012800	ENSCSAP00000017765	ENSCSAP00000012800	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.632
ENSCSAP00000017765	TRIM3	ENSCSAP00000017765	ENSCSAP00000000666	Ubiquitin-like domain-containing protein.	Tripartite motif containing 3.	0.499

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About