Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival motor neuron domain containing 1. (238 aa)    
Predicted Functional Partners:
SF3A2
Splicing factor 3a subunit 2.
    
 0.966
PHF5A
PHD finger protein 5A.
   
 0.960
U2SURP
U2 snRNP associated SURP domain containing.
    
 0.959
SF3B1
Splicing factor 3b subunit 1.
   
 0.956
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.954
RBM17
RNA binding motif protein 17.
   
 0.941
SF3B2
Splicing factor 3b subunit 2.
   
 0.932
DHX15
DEAH-box helicase 15.
   
  0.928
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
  0.926
PUF60
Poly(U) binding splicing factor 60.
   
 0.915
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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