Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SGCASarcoglycan alpha. (380 aa)    
Predicted Functional Partners:
SSPN
Sarcospan.
   
 0.990
DAG1
Dystroglycan 1.
    
 0.990
SGCD
Sarcoglycan delta.
   
 0.987
SGCG
Sarcoglycan gamma.
   
 0.987
SGCB
Sarcoglycan beta.
   
 
 0.960
SGCE
Sarcoglycan epsilon.
     
 
0.935
SNTA1
Syntrophin alpha 1.
    
 0.874
ENSCSAP00000010271
ZZ-type domain-containing protein.
    
 0.868
SNTB1
Syntrophin beta 1.
    
 0.850
UTRN
Utrophin.
    
 0.849
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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