STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX49DEAD-box helicase 49; Belongs to the DEAD box helicase family. (483 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.991
ABT1
Activator of basal transcription 1.
   
 
 0.979
NOL6
Nucleolar protein 6.
   
 0.977
WDR46
WD repeat domain 46.
   
 0.950
UTP25
UTP25 small subunit processor component.
   
 
 0.946
BYSL
Bystin like.
   
 
 0.942
DDX52
DExD-box helicase 52.
  
0.935
EMG1
EMG1 N1-specific pseudouridine methyltransferase.
   
 0.931
PDCD11
Programmed cell death 11.
   
 0.928
DHX37
DEAH-box helicase 37.
   
 0.926
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.