Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UPK3AUroplakin 3A. (240 aa)    
Predicted Functional Partners:
UPK1B
Tetraspanin.
   
 
 0.944
UPK2
Uroplakin 2.
  
 
 0.909
UPK1A
Tetraspanin.
   
 
 0.832
SNX31
Sorting nexin 31.
    
 
 0.768
GCSAM
Germinal center associated signaling and motility.
      
 0.525
TMEM14A
Transmembrane protein 14A.
      
 0.507
CD151
Tetraspanin.
    
 
 0.489
KRT20
Keratin 20; Belongs to the intermediate filament family.
      
 0.489
GGT5
Gamma-glutamyltransferase 5.
      
 0.487
CD53
Tetraspanin.
    
 
 0.485
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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