STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAMR1Peptidase domain containing associated with muscle regeneration 1; Belongs to the peptidase S1 family. (654 aa)    
Predicted Functional Partners:
GDPD2
Glycerophosphodiester phosphodiesterase domain containing 2.
    
 
 0.618
CCBE1
Collagen and calcium binding EGF domains 1.
     
 0.617
PDZRN4
PDZ domain containing ring finger 4.
      
 0.613
CNTN6
Contactin 6.
   
 
 0.551
KCNMB4
Potassium calcium-activated channel subfamily M regulatory beta subunit 4.
      
 0.524
SYT17
Synaptotagmin 17.
      
 0.524
THSD7B
Uncharacterized protein.
      
 0.524
STX19
Syntaxin 19; Belongs to the syntaxin family.
      
 0.514
CLPTM1L
CLPTM1 like.
    
 
 0.510
ENDOU
Endonuclease, poly(U) specific.
      
 0.506
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.