STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DHX40DEAH-box helicase 40. (613 aa)    
Predicted Functional Partners:
PPIL4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
   
 0.952
USP7
Ubiquitin specific peptidase 7; Belongs to the peptidase C19 family.
    
 
 0.846
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.837
DDX49
DEAD-box helicase 49; Belongs to the DEAD box helicase family.
   
 0.729
UTP3
UTP3 small subunit processome component.
   
 0.697
SLU7
SLU7 homolog, splicing factor.
   
 0.690
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.688
IMP3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.686
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.679
UTP18
UTP18 small subunit processome component.
   
 0.679
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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