STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYDE1Synapse defective Rho GTPase homolog 1. (735 aa)    
Predicted Functional Partners:
POLR2D
RNA polymerase II subunit D.
    
   0.774
APBB1
Amyloid beta precursor protein binding family B member 1.
    
   0.722
RHOG
Ras homolog family member G.
    
 0.713
RHOB
Ras homolog family member B.
    
 0.696
GCM1
Glial cells missing transcription factor 1.
      
 0.674
PACSIN1
Protein kinase C and casein kinase substrate in neurons 1.
   
  
 0.623
CNTROB
Centrobin, centriole duplication and spindle assembly protein.
    
 
 0.617
GEN1
GEN1 Holliday junction 5' flap endonuclease.
      
 0.614
NLGN2
Neuroligin 2.
      
 0.612
XPO1
Exportin 1.
      
 0.581
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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