STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM1PDZ and LIM domain 1. (284 aa)    
Predicted Functional Partners:
ACTN4
Actinin alpha 4.
   
 
 0.893
ACTN1
Actinin alpha 1.
   
 
 0.885
ACTN2
Actinin alpha 2.
   
 
 0.876
GFAP
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
   
 
 0.745
STK35
Serine/threonine kinase 35; Belongs to the protein kinase superfamily.
    
 
 0.725
SH3RF3
SH3 domain containing ring finger 3.
    
 0.660
ACTN3
Actinin alpha 3 (gene/pseudogene).
   
 
 0.626
PDLIM7
PDZ and LIM domain 7.
   
 
0.615
VCL
Vinculin.
   
 0.600
PDLIM5
PDZ and LIM domain 5.
   
 
 0.599
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.