Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL2A1Collagen type II alpha 1 chain. (1488 aa)    
Predicted Functional Partners:
CD44
CD44 molecule (Indian blood group).
    
 0.931
HOXD10
Homeobox D10.
      
 0.919
HOXD9
Homeobox D9.
      
 0.917
COL1A1
Collagen type I alpha 1 chain.
  
 
0.904
ENSCSAP00000016261
Uncharacterized protein.
     
 0.900
COL11A1
Collagen type XI alpha 1 chain.
  
0.879
COL9A1
Collagen type IX alpha 1 chain.
   
 0.828
HOXD8
Homeobox D8.
      
 0.816
SOX9
SRY-box transcription factor 9.
    
 
 0.810
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.810
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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