Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC130Coiled-coil domain containing 130. (349 aa)    
Predicted Functional Partners:
SYF2
SYF2 pre-mRNA splicing factor.
    
 0.931
JUP
Junction plakoglobin.
    
   0.909
XAB2
XPA binding protein 2.
   
 0.848
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
    
  0.814
ESS2
Ess-2 splicing factor homolog.
    
 
 0.800
KDM8
Lysine demethylase 8.
    
   0.784
NAA25
N(alpha)-acetyltransferase 25, NatB auxiliary subunit.
    
   0.748
CDC40
Cell division cycle 40.
    
 
 0.739
CDC5L
Cell division cycle 5 like.
    
 
 0.734
PRPF19
Pre-mRNA processing factor 19.
    
   0.733
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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