STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6RB binding protein 6, ubiquitin ligase. (1792 aa)    
Predicted Functional Partners:
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.988
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.966
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.966
SYMPK
Symplekin.
    
 0.941
WDR33
WD repeat domain 33.
   
 0.939
FIP1L1
Fip1 domain-containing protein.
    
 0.933
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.929
PAPOLG
Poly(A) polymerase gamma.
   
 0.921
PAPOLA
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.902
CPSF6
Cleavage and polyadenylation specific factor 6.
    
 0.881
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.