STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM39ATransmembrane protein 39A. (488 aa)    
Predicted Functional Partners:
SACM1L
SAC1 like phosphatidylinositide phosphatase.
      
 0.587
FAM118A
Family with sequence similarity 118 member A.
      
 0.556
YKT6
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
      
 0.519
ENSCSAP00000008208
Uncharacterized protein.
      
 0.476
PLD6
Phospholipase D family member 6.
      
 0.475
DNAJC18
DnaJ heat shock protein family (Hsp40) member C18.
      
 0.459
RHBDD3
Rhomboid domain containing 3.
      
 0.458
LETM2
Leucine zipper and EF-hand containing transmembrane protein 2.
      
 0.456
SEC63
SEC63 homolog, protein translocation regulator.
      
 0.427
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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