Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF4BPre-mRNA processing factor 4B. (1007 aa)    
Predicted Functional Partners:
PNN
Pinin, desmosome associated protein.
   
 0.962
RBM25
RNA binding motif protein 25.
   
 0.918
TCERG1
Transcription elongation regulator 1.
   
 0.888
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.881
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.846
PRPF31
Pre-mRNA processing factor 31.
    
 
 0.837
ZC3H18
Zinc finger CCCH-type containing 18.
   
   0.826
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.811
PRPF4
Pre-mRNA processing factor 4.
    
 
 0.806
RBM39
RNA binding motif protein 39.
   
 0.804
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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