Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL5A3Collagen type V alpha 3 chain. (1749 aa)    
Predicted Functional Partners:
COL5A2
Collagen type V alpha 2 chain.
  
0.852
COL5A1
Collagen type V alpha 1 chain.
  
 
0.816
COL2A1
Collagen type II alpha 1 chain.
  
0.753
COL1A2
Collagen type I alpha 2 chain.
  
0.644
COL3A1
Collagen type III alpha 1 chain.
  
 
0.627
COL6A2
Collagen type VI alpha 2 chain.
   
 0.626
COL1A1
Collagen type I alpha 1 chain.
  
0.596
COL27A1
Collagen type XXVII alpha 1 chain.
  
 
0.575
SERPINH1
Serpin family H member 1; Belongs to the serpin family.
   
 0.569
COL6A1
Uncharacterized protein.
   
 0.556
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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