STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JMJD1CJumonji domain containing 1C. (1362 aa)    
Predicted Functional Partners:
KDM3B
Lysine demethylase 3B.
 
 
  
 0.893
KDM3A
Lysine demethylase 3A.
 
 
    0.886
KDM4B
Lysine demethylase 4B.
     
 0.711
KDM5B
Lysine demethylase 5B.
   
 
 0.693
PRMT6
Protein arginine methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
      
 0.673
NIPBL
Nipped-B protein.
   
  
 0.638
KDM4C
Lysine demethylase 4C.
     
 0.626
KDM4A
Uncharacterized protein.
     
 0.626
REEP3
Receptor expression-enhancing protein.
      
 0.613
KDM7A
Lysine demethylase 7A.
   
 
 0.602
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.