STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HTATSF1HIV-1 Tat specific factor 1. (754 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
    
 0.959
CDC40
Cell division cycle 40.
     
 0.957
SF3A2
Splicing factor 3a subunit 2.
   
 0.932
TCERG1
Transcription elongation regulator 1.
   
 
 0.928
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.928
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.923
SUGP1
SURP and G-patch domain containing 1.
     
 0.920
RBM39
RNA binding motif protein 39.
     
 0.903
PPP1R8
Protein phosphatase 1 regulatory subunit 8.
     
  0.899
SRRT
Serrate, RNA effector molecule.
   
 
  0.891
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.