Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS51VPS51 subunit of GARP complex. (806 aa)    
Predicted Functional Partners:
VPS52
VPS52 subunit of GARP complex.
   
 0.999
VPS53
VPS53 subunit of GARP complex.
   
 0.999
VPS54
VPS54 subunit of GARP complex.
    
 0.996
EIPR1
EARP complex and GARP complex interacting protein 1.
   
 0.980
VPS50
VPS50 subunit of EARP/GARPII complex.
    
 0.980
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.918
SNAP29
Synaptosome associated protein 29.
    
 
 0.856
STX16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.856
COG1
Component of oligomeric golgi complex 1.
   
 
 0.847
STX10
Syntaxin 10; Belongs to the syntaxin family.
    
 0.790
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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