| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GPC3 | IGF2 | ENSCSAP00000004068 | ENSCSAP00000006047 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Insulin like growth factor 2. | 0.939 |
| GPC3 | IHH | ENSCSAP00000004068 | ENSCSAP00000004661 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | 0.976 |
| GPC3 | SHH | ENSCSAP00000004068 | ENSCSAP00000002769 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | 0.980 |
| GPC3 | WNT2 | ENSCSAP00000004068 | ENSCSAP00000007106 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.939 |
| GPC3 | WNT2B | ENSCSAP00000004068 | ENSCSAP00000016438 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.933 |
| GPC3 | WNT3 | ENSCSAP00000004068 | ENSCSAP00000000117 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.929 |
| GPC3 | WNT3A | ENSCSAP00000004068 | ENSCSAP00000012510 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.947 |
| GPC3 | WNT5A | ENSCSAP00000004068 | ENSCSAP00000009056 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.942 |
| GPC3 | WNT5B | ENSCSAP00000004068 | ENSCSAP00000007831 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.942 |
| GPC3 | WNT7B | ENSCSAP00000004068 | ENSCSAP00000001636 | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.929 |
| IGF2 | GPC3 | ENSCSAP00000006047 | ENSCSAP00000004068 | Insulin like growth factor 2. | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.939 |
| IHH | GPC3 | ENSCSAP00000004661 | ENSCSAP00000004068 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.976 |
| IHH | SHH | ENSCSAP00000004661 | ENSCSAP00000002769 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | 0.938 |
| IHH | WNT2 | ENSCSAP00000004661 | ENSCSAP00000007106 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.455 |
| SHH | GPC3 | ENSCSAP00000002769 | ENSCSAP00000004068 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.980 |
| SHH | IHH | ENSCSAP00000002769 | ENSCSAP00000004661 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | 0.938 |
| SHH | WNT2 | ENSCSAP00000002769 | ENSCSAP00000007106 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.610 |
| SHH | WNT3A | ENSCSAP00000002769 | ENSCSAP00000012510 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.525 |
| SHH | WNT5A | ENSCSAP00000002769 | ENSCSAP00000009056 | Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | 0.462 |
| WNT2 | GPC3 | ENSCSAP00000007106 | ENSCSAP00000004068 | Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. | Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. | 0.939 |