STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VSNL1Visinin like 1. (263 aa)    
Predicted Functional Partners:
CDK5R1
Cyclin-dependent kinase 5 activator.
   
  
 0.758
CCNY
Cyclin Y; Belongs to the cyclin family.
      
 0.745
MANF
Mesencephalic astrocyte derived neurotrophic factor.
     
 0.742
PPARGC1A
PPARG coactivator 1 alpha.
   
  
 0.708
NCALD
Neurocalcin delta.
   
   0.705
ATN1
Atrophin 1.
      
 0.648
PI4KB
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.648
KCND1
Potassium voltage-gated channel subfamily D member 1; Belongs to the potassium channel family.
   
 0.627
ENSCSAP00000010387
Uncharacterized protein.
   
  
 0.614
RTN1
Reticulon.
   
  
 0.614
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.