STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL13A1Collagen type XIII alpha 1 chain. (759 aa)    
Predicted Functional Partners:
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.652
KCNS1
Ion_trans domain-containing protein; Belongs to the potassium channel family.
      
 0.604
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
    
 0.578
COL6A1
Uncharacterized protein.
  
0.552
SERPINH1
Serpin family H member 1; Belongs to the serpin family.
   
 0.545
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.541
P4HB
Protein disulfide-isomerase.
    
 0.517
P3H2
Prolyl 3-hydroxylase 2.
    
 0.516
P3H1
Prolyl 3-hydroxylase 1.
    
 0.513
EMID1
EMI domain containing 1.
  
  
0.482
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.