Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM39Tripartite motif containing 39. (488 aa)    
Predicted Functional Partners:
TRIM17
Tripartite motif containing 17.
    
   0.746
UBTD1
Ubiquitin domain containing 1.
    
   0.722
UBE2D1
Ubiquitin conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.719
PNRC1
Proline rich nuclear receptor coactivator 1.
   
  
 0.689
RPP21
Ribonuclease P/MRP subunit p21.
 
 
  
 0.597
ENSCSAP00000004665
POU domain protein.
    
 0.586
ANKRD11
Ankyrin repeat domain 11.
    
 0.586
POU5F2
POU domain class 5, transcription factor 2.
    
 0.586
PPP1R11
Protein phosphatase 1 regulatory inhibitor subunit 11.
      
 0.574
ZNF12
Zinc finger protein 12.
   
 0.569
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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