STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SQSTM1Sequestosome 1. (440 aa)    
Predicted Functional Partners:
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.997
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.990
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.990
KEAP1
Kelch like ECH associated protein 1.
    
 0.985
GABARAP
GABA type A receptor-associated protein.
   
 0.984
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.975
NBR1
NBR1 autophagy cargo receptor.
   
0.970
TBK1
TANK binding kinase 1.
    
 0.968
RIPK1
Receptor interacting serine/threonine kinase 1.
   
 0.968
MAP1LC3B
Uncharacterized protein.
   
 0.967
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.