STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LITAFLipopolysaccharide induced TNF factor. (161 aa)    
Predicted Functional Partners:
NEDD4
E3 ubiquitin-protein ligase.
    
 
 0.885
NEDD4L
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.781
BAG3
BCL2 associated athanogene 3.
    
 
 0.777
WWOX
WW domain containing oxidoreductase.
    
 
 0.756
TSG101
Tumor susceptibility 101.
    
 
 0.745
SH3TC2
Uncharacterized protein.
   
  
 0.739
RASA3
RAS p21 protein activator 3.
      
 0.726
IL6
Interleukin 6.
     
 0.688
IL1B
Multifunctional fusion protein; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production; Belongs to the IL-1 family.
      
 0.675
ITCH
E3 ubiquitin-protein ligase.
    
 
 0.640
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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