STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTL9Retrotransposon Gag like 9. (1374 aa)    
Predicted Functional Partners:
XYLB
Xylulokinase.
      
 0.612
LDOC1
LDOC1 regulator of NFKB signaling.
  
   
 0.580
PDE4DIP
Phosphodiesterase 4D interacting protein.
   
 
 0.554
RTL6
Retrotransposon Gag like 6.
      
 0.548
CCDC8
Coiled-coil domain containing 8.
    
 0.539
PCSK1N
Proprotein convertase subtilisin/kexin type 1 inhibitor.
  
  
 0.514
FANCM
FA complementation group M.
    
 0.505
RTL4
Retrotransposon Gag like 4.
      
 0.492
PNMA6E
PNMA family member 6E.
    
 
 0.489
MARCHF6
Membrane associated ring-CH-type finger 6.
      
 0.486
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.