STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C10orf55Chromosome 10 open reading frame 55. (149 aa)    
Predicted Functional Partners:
RABEPK
Rab9 effector protein with kelch motifs.
      
 0.673
DUS3L
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
      
 0.672
GRSF1
G-rich RNA sequence binding factor 1.
      
 0.604
PLEKHB1
Pleckstrin homology domain containing B1.
    
   0.582
IKZF1
IKAROS family zinc finger 1.
      
 0.548
LMO2
LIM domain only 2.
      
 0.544
KCNH2
Potassium voltage-gated channel subfamily H member 2.
      
 0.519
ERCC4
ERCC excision repair 4, endonuclease catalytic subunit.
    
   0.461
MYADM
Myeloid associated differentiation marker.
      
 0.459
RUNX2
Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.
      
 0.412
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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