Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA3DSemaphorin 3D; Belongs to the semaphorin family. (777 aa)    
Predicted Functional Partners:
NRP1
Neuropilin; Belongs to the neuropilin family.
    
 0.951
PLXND1
Plexin D1.
    
 0.661
PLXNA1
Plexin A1.
    
 0.579
METTL4
Methyltransferase like 4; Belongs to the MT-A70-like family.
      
 0.572
LRRC4C
Leucine rich repeat containing 4C.
      
 0.569
TFEC
Transcription factor EC.
      
 0.566
SEMA3C
Semaphorin 3C; Belongs to the semaphorin family.
    
   0.543
PLXNA3
Plexin A3.
    
 0.520
SLIT2
Slit guidance ligand 2.
      
 0.489
BATF2
Basic leucine zipper ATF-like transcription factor 2.
      
 0.487
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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