STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLN6CLN6 transmembrane ER protein. (246 aa)    
Predicted Functional Partners:
CLN5
Uncharacterized protein.
  
   
 0.807
CLN8
CLN8 transmembrane ER and ERGIC protein.
      
 0.777
CLN3
Battenin.
      
 0.772
TPP1
Tripeptidyl peptidase 1.
    
 0.651
CTSF
Cathepsin F; Belongs to the peptidase C1 family.
   
 
 0.632
MFSD8
Major facilitator superfamily domain containing 8.
      
 0.630
CLCN6
Chloride voltage-gated channel 6; Belongs to the chloride channel (TC 2.A.49) family.
      
 0.620
NAGLU
N-acetyl-alpha-glucosaminidase.
      
 0.618
ARSG
Arylsulfatase G.
      
 0.614
PPT1
Palmitoyl-protein thioesterase 1.
   
  
 0.611
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.