STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL43450.1PFAM: carbon starvation protein CstA; KEGG: chy:CHY_2217 carbon starvation protein A. (599 aa)    
Predicted Functional Partners:
ADL43451.1
Two component transcriptional regulator, LytTR family; KEGG: chy:CHY_2218 DNA-binding response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver.
 
   
 0.730
ADL43452.1
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; KEGG: chy:CHY_2219 sensor histidine kinase.
 
   
 0.678
ADL43449.1
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: adg:Adeg_1075 FMN-dependent alpha-hydroxy acid dehydrogenase.
       0.515
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
   0.446
Your Current Organism:
Caldicellulosiruptor obsidiansis
NCBI taxonomy Id: 608506
Other names: C. obsidiansis OB47, Caldicellulosiruptor obsidiansis OB47, Caldicellulosiruptor obsidiansis str. OB47, Caldicellulosiruptor obsidiansis strain OB47, Caldicellulosiruptor sp. OB47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.