STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL43498.1PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: sto:ST1780 hypothetical protein. (241 aa)    
Predicted Functional Partners:
ADL43239.1
PFAM: DNA polymerase beta domain protein region; KEGG: ate:Athe_2195 DNA polymerase beta domain protein region.
  
     0.545
ADL43497.1
KEGG: csc:Csac_0046 hypothetical protein.
       0.479
ADL43302.1
PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_0229 DNA polymerase beta subunit.
  
     0.464
ADL41609.1
PFAM: PilT protein domain protein; KEGG: ate:Athe_0272 PilT protein domain protein.
  
     0.416
Your Current Organism:
Caldicellulosiruptor obsidiansis
NCBI taxonomy Id: 608506
Other names: C. obsidiansis OB47, Caldicellulosiruptor obsidiansis OB47, Caldicellulosiruptor obsidiansis str. OB47, Caldicellulosiruptor obsidiansis strain OB47, Caldicellulosiruptor sp. OB47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.