STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL43525.1PFAM: Rhomboid family protein; KEGG: ate:Athe_2713 rhomboid family protein. (242 aa)    
Predicted Functional Partners:
ADL43524.1
KEGG: ate:Athe_2712 protein of unknown function DUF114.
 
  
 0.840
ADL42735.1
KEGG: ate:Athe_1080 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
   0.746
ADL42750.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: ate:Athe_1064 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
  
   0.746
ADL41955.1
KEGG: ate:Athe_0691 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein.
   
 0.731
ADL41718.1
KEGG: ate:Athe_0430 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
   0.704
ADL42589.1
Manually curated; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: ate:Athe_1260 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase.
  
    0.579
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 
 0.478
ADL43526.1
PFAM: BioY protein; KEGG: ate:Athe_2725 BioY protein.
       0.461
Your Current Organism:
Caldicellulosiruptor obsidiansis
NCBI taxonomy Id: 608506
Other names: C. obsidiansis OB47, Caldicellulosiruptor obsidiansis OB47, Caldicellulosiruptor obsidiansis str. OB47, Caldicellulosiruptor obsidiansis strain OB47, Caldicellulosiruptor sp. OB47
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