STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE92136.1Putative Mg chelatase-like protein; KEGG: chu:CHU_0354 1.2e-74 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 8.87. (400 aa)    
Predicted Functional Partners:
dprA
DNA protecting protein DprA; KEGG: hip:CGSHiEE_07040 7.2e-36 2-isopropylmalate synthase K04096; Psort location: Cytoplasmic, score: 8.87.
 
 0.969
EFE93016.1
comF family protein; KEGG: chu:CHU_3495 3.8e-22 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.809
EFE92057.1
TIGR00252 family protein; KEGG: vfi:VF_2212 3.0e-14 yraN; hypothetical protein K07460; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0102 family.
 
  
 0.728
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
    0.654
EFE92137.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.572
recJ
KEGG: aoe:Clos_1716 4.9e-133 single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease; Psort location: Cytoplasmic, score: 8.87.
 
     0.520
EFE92133.1
Hypothetical protein.
       0.498
rpsB
Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.
       0.482
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
       0.408
Your Current Organism:
Oribacterium sp. F0262
NCBI taxonomy Id: 608534
Other names: O. sp. oral taxon 078 str. F0262, Oribacterium sp. oral taxon 078 str. F0262, Oribacterium sp. oral taxon 078 strain F0262
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.