Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
derRibosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (441 aa)    
Predicted Functional Partners:
gpsA
KEGG: cpy:Cphy_2388 4.5e-98 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.988
cmk
Cytidylate kinase; KEGG: cpy:Cphy_2450 4.6e-57 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
  
 0.975
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
  
 
 0.911
ylqF
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 
 0.889
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 
 0.851
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 
 0.838
plsY
Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.829
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 
 0.818
rpmF
Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
   0.813
rpmG
Ribosomal protein L33; KEGG: mmo:MMOB5490 1.2e-08 rpmG; 50S ribosomal protein L33 K02913; Psort location: Extracellular, score: 8.82; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.811
Your Current Organism:
Oribacterium sp. F0262
NCBI taxonomy Id: 608534
Other names: O. sp. oral taxon 078 str. F0262, Oribacterium sp. oral taxon 078 str. F0262, Oribacterium sp. oral taxon 078 strain F0262
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