STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirDNirD-like protein. (334 aa)    
Predicted Functional Partners:
nirJ
Predicted Fe-S oxidoreductases.
  
 0.875
nirF
NirF protein.
 
    0.790
nirN
NirN protein.
 
    0.783
nirS
Cytochrome cd1 nitrite reductase.
 
    0.776
norB
Nitric oxide reductase cytochrome b subunit.
  
  
 0.671
nsrR
Transcriptional regulator, BadM/Rrf2 family.
     
 0.616
gltS
Ferredoxin-dependent glutamate synthase.
     
 0.518
norC
Nitric oxide reductase cytochrome c subunit.
  
    0.516
Your Current Organism:
Hydrogenobacter thermophilus
NCBI taxonomy Id: 608538
Other names: H. thermophilus TK-6, Hydrogenobacter thermophilus DSM 6534, Hydrogenobacter thermophilus TK-6, Hydrogenobacter thermophilus str. TK-6, Hydrogenobacter thermophilus strain TK-6
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