STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsrRTranscriptional regulator, BadM/Rrf2 family. (151 aa)    
Predicted Functional Partners:
HTH_1301
NifU-like protein.
  
  
 0.765
nifS1
FeS cluster formation protein.
  
  
 0.739
nifS2
FeS cluster formation protein.
  
  
 0.739
nasB
Assimilatory nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.689
pilD
Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
      
 0.676
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
      
 0.676
nirD
NirD-like protein.
     
 0.616
norB
Nitric oxide reductase cytochrome b subunit.
     
 0.459
fadD
Long-chain-fatty-acid CoA ligase.
     
 0.455
nirB
Assimilatory nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.434
Your Current Organism:
Hydrogenobacter thermophilus
NCBI taxonomy Id: 608538
Other names: H. thermophilus TK-6, Hydrogenobacter thermophilus DSM 6534, Hydrogenobacter thermophilus TK-6, Hydrogenobacter thermophilus str. TK-6, Hydrogenobacter thermophilus strain TK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.