STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTH_0346Sigma 54 specific transcriptional regulator, Fis family. (518 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma 54 factor.
 
   
 0.818
HTH_0347
Sterol-binding domain protein.
       0.788
HTH_0345
Hypothetical protein.
       0.773
HTH_0348
Hypothetical protein.
       0.643
HTH_0349
Hypothetical protein.
       0.619
HTH_0927
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
     
 0.489
HTH_0054
Diguanylate cyclase (GGDEF motif) with PAS/PAC sensor.
     
 0.431
Your Current Organism:
Hydrogenobacter thermophilus
NCBI taxonomy Id: 608538
Other names: H. thermophilus TK-6, Hydrogenobacter thermophilus DSM 6534, Hydrogenobacter thermophilus TK-6, Hydrogenobacter thermophilus str. TK-6, Hydrogenobacter thermophilus strain TK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.