STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTH_1544ABC transporter. (248 aa)    
Predicted Functional Partners:
dppC
Binding-protein-dependent transport systems inner membrane component.
 
 0.999
oppB
Peptide ABC transporter permease protein.
 0.996
ddpA
Transporter (extracellular solute binding protein family 5).
 
 0.984
HTH_1260
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 
0.917
livG
ABC-type branched-chain amino acid transporter ATPase component.
    
0.908
HTH_1317
Molybdenum ABC transporter ATP-binding protein.
 
    
0.907
cbiO
ABC-type cobalt transport system ATPase component.
 
     
0.899
HTH_0937
ABC transporter permease protein.
 
      0.899
engA
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.784
HTH_1545
Histidine triad (HIT) protein.
       0.774
Your Current Organism:
Hydrogenobacter thermophilus
NCBI taxonomy Id: 608538
Other names: H. thermophilus TK-6, Hydrogenobacter thermophilus DSM 6534, Hydrogenobacter thermophilus TK-6, Hydrogenobacter thermophilus str. TK-6, Hydrogenobacter thermophilus strain TK-6
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