STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL03060.1PFAM: transglutaminase domain protein; KEGG: cdf:CD3366 hypothetical protein. (277 aa)    
Predicted Functional Partners:
ADL03061.1
KEGG: bcg:BCG9842_B4210 collagen adhesion protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein.
     
 0.524
ADL03062.1
KEGG: bbo:BBOV_III007200 hypothetical protein.
       0.523
ADL03059.1
Hypothetical protein.
       0.513
ADL03484.1
PFAM: Abortive infection protein; KEGG: sgo:SGO_0490 CAAX amino protease.
    
   0.407
ADL04280.1
PFAM: Abortive infection protein; KEGG: blt:Balat_0250 hypothetical protein.
    
   0.407
ADL05087.1
PFAM: Abortive infection protein; KEGG: ere:EUBREC_2275 CAAX amino terminal protease family protein.
    
   0.407
Your Current Organism:
Clostridium saccharolyticum WM1
NCBI taxonomy Id: 610130
Other names: Clostridium saccharolyticum DSM 2544, [. saccharolyticum WM1, [Clostridium] saccharolyticum WM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.