STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL04590.1PFAM: integrase family protein; KEGG: ere:EUBREC_1704 phage integrase family protein; Belongs to the 'phage' integrase family. (351 aa)    
Predicted Functional Partners:
ADL06306.1
KEGG: ere:EUBREC_1005 hypothetical protein.
  
     0.617
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.568
ADL04823.1
PFAM: SEC-C motif domain protein; KEGG: eel:EUBELI_00499 preprotein translocase SecA subunit.
  
     0.546
ADL04621.1
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: ere:EUBREC_1742 peptidoglycan glycosyltransferase.
  
   
 0.522
ADL04622.1
TIGRFAM: rod shape-determining protein MreD; KEGG: ere:EUBREC_1743 hypothetical protein.
  
     0.514
ADL03850.1
KEGG: eel:EUBELI_01627 hypothetical protein.
  
     0.511
ADL06778.1
KEGG: cpy:Cphy_3931 hypothetical protein.
  
     0.494
ADL04930.1
KEGG: eel:EUBELI_01450 hypothetical protein.
  
     0.483
ADL04613.1
KEGG: eel:EUBELI_01154 hypothetical protein.
  
     0.482
ADL03711.1
KEGG: ere:EUBREC_0059 hypothetical protein.
  
     0.470
Your Current Organism:
Clostridium saccharolyticum WM1
NCBI taxonomy Id: 610130
Other names: Clostridium saccharolyticum DSM 2544, [. saccharolyticum WM1, [Clostridium] saccharolyticum WM1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.