STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL05640.1KEGG: ckr:CKR_3434 hypothetical protein; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein. (277 aa)    
Predicted Functional Partners:
ADL05644.1
KEGG: ckr:CKR_3430 hypothetical protein.
 
  
 0.974
ADL05643.1
KEGG: ckl:CKL_3887 hypothetical protein.
 
  
 0.973
ADL05642.1
PFAM: type II secretion system protein E; KEGG: ckr:CKR_3432 hypothetical protein.
 
  
 0.966
ADL05641.1
SMART: AAA ATPase; KEGG: ckr:CKR_3433 hypothetical protein.
 
   
 0.949
ADL05645.1
KEGG: ckr:CKR_3429 hypothetical protein.
 
     0.943
ADL05646.1
KEGG: ckl:CKL_3885 hypothetical protein.
 
     0.943
ADL05638.1
KEGG: lmy:LM5923_1845 hypothetical protein.
 
     0.941
ADL05639.1
PFAM: peptidase A24A prepilin type IV; KEGG: ckr:CKR_3435 hypothetical protein.
 
   
 0.940
ADL05378.1
KEGG: lmy:LM5923_1839 hypothetical protein.
 
  
 0.889
ADL06060.1
KEGG: dsy:DSY4659 hypothetical protein.
 
  
 0.889
Your Current Organism:
Clostridium saccharolyticum WM1
NCBI taxonomy Id: 610130
Other names: Clostridium saccharolyticum DSM 2544, [. saccharolyticum WM1, [Clostridium] saccharolyticum WM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.