Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
ADL05735.1TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: cpy:Cphy_0408 putative radical SAM protein; SMART: Elongator protein 3/MiaB/NifB. (314 aa)    
Predicted Functional Partners:
ADL05734.1
Galactokinase; KEGG: pjd:Pjdr2_5478 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase.
       0.480
ADL03518.1
PFAM: peptidase U32; KEGG: eel:EUBELI_00780 putative protease.
 
    0.409
Your Current Organism:
Clostridium saccharolyticum WM1
NCBI taxonomy Id: 610130
Other names: Clostridium saccharolyticum DSM 2544, [. saccharolyticum WM1, [Clostridium] saccharolyticum WM1
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