Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADL05738.1PHP domain protein; KEGG: gym:GYMC10_3545 phosphoesterase PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein. (426 aa)    
Predicted Functional Partners:
ADL05741.1
PFAM: extracellular solute-binding protein family 1; KEGG: pjd:Pjdr2_2847 extracellular solute-binding protein family 1.
 
     0.888
ADL05740.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_3547 binding-protein-dependent transport systems inner membrane component.
 
     0.777
ADL05739.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_3546 binding-protein-dependent transport systems inner membrane component.
       0.759
ADL05737.1
PFAM: glycoside hydrolase family 38; KEGG: gym:GYMC10_2685 glycoside hydrolase family 38.
 
     0.705
ADL02739.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0485 binding-protein-dependent transport systems inner membrane component.
 
     0.412
ADL06122.1
PFAM: conserved hypothetical protein; KEGG: cpy:Cphy_1124 hypothetical protein.
  
     0.410
Your Current Organism:
Clostridium saccharolyticum WM1
NCBI taxonomy Id: 610130
Other names: Clostridium saccharolyticum DSM 2544, [. saccharolyticum WM1, [Clostridium] saccharolyticum WM1
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