Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BU064_05660 | BU064_11075 | GCA_001902315_00155 | GCA_001902315_00443 | Unannotated protein. | Unannotated protein; Belongs to the UPF0735 family. | 0.926 |
BU064_05660 | BU064_12490 | GCA_001902315_00155 | GCA_001902315_00812 | Unannotated protein. | Unannotated protein. | 0.959 |
BU064_11075 | BU064_05660 | GCA_001902315_00443 | GCA_001902315_00155 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein. | 0.926 |
BU064_11075 | BU064_11090 | GCA_001902315_00443 | GCA_001902315_00440 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein. | 0.799 |
BU064_11075 | BU064_12490 | GCA_001902315_00443 | GCA_001902315_00812 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein. | 0.921 |
BU064_11075 | obg | GCA_001902315_00443 | GCA_001902315_00442 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.868 |
BU064_11075 | queA | GCA_001902315_00443 | GCA_001902315_00446 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.826 |
BU064_11075 | rpmA | GCA_001902315_00443 | GCA_001902315_00441 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.773 |
BU064_11075 | ruvA | GCA_001902315_00443 | GCA_001902315_00444 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.863 |
BU064_11075 | ruvB | GCA_001902315_00443 | GCA_001902315_00445 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.826 |
BU064_11075 | tgt | GCA_001902315_00443 | GCA_001902315_00447 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...] | 0.811 |
BU064_11075 | yajC | GCA_001902315_00443 | GCA_001902315_00448 | Unannotated protein; Belongs to the UPF0735 family. | Unannotated protein. | 0.800 |
BU064_11090 | BU064_11075 | GCA_001902315_00440 | GCA_001902315_00443 | Unannotated protein. | Unannotated protein; Belongs to the UPF0735 family. | 0.799 |
BU064_11090 | obg | GCA_001902315_00440 | GCA_001902315_00442 | Unannotated protein. | Unannotated protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.773 |
BU064_11090 | queA | GCA_001902315_00440 | GCA_001902315_00446 | Unannotated protein. | Unannotated protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.735 |
BU064_11090 | rpmA | GCA_001902315_00440 | GCA_001902315_00441 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
BU064_11090 | ruvA | GCA_001902315_00440 | GCA_001902315_00444 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.762 |
BU064_11090 | ruvB | GCA_001902315_00440 | GCA_001902315_00445 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.735 |
BU064_11090 | tgt | GCA_001902315_00440 | GCA_001902315_00447 | Unannotated protein. | Unannotated protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...] | 0.724 |
BU064_11090 | yajC | GCA_001902315_00440 | GCA_001902315_00448 | Unannotated protein. | Unannotated protein. | 0.716 |
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