Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BU064_04940 | BU064_04945 | GCA_001902315_01047 | GCA_001902315_01048 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein. | 0.852 |
BU064_04940 | BU064_04955 | GCA_001902315_01047 | GCA_001902315_01050 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein. | 0.769 |
BU064_04940 | BU064_11335 | GCA_001902315_01047 | GCA_001902315_00937 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.828 |
BU064_04940 | BU064_12655 | GCA_001902315_01047 | GCA_001902315_01162 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein. | 0.775 |
BU064_04940 | mnmE | GCA_001902315_01047 | GCA_001902315_01933 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.781 |
BU064_04940 | pheT | GCA_001902315_01047 | GCA_001902315_01045 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.810 |
BU064_04940 | rplU | GCA_001902315_01047 | GCA_001902315_00439 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.763 |
BU064_04940 | rplX | GCA_001902315_01047 | GCA_001902315_02602 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.796 |
BU064_04940 | rpmF | GCA_001902315_01047 | GCA_001902315_01049 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family. | 0.884 |
BU064_04940 | rsfS | GCA_001902315_01047 | GCA_001902315_00490 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.772 |
BU064_04945 | BU064_04940 | GCA_001902315_01048 | GCA_001902315_01047 | Unannotated protein. | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.852 |
BU064_04945 | BU064_04955 | GCA_001902315_01048 | GCA_001902315_01050 | Unannotated protein. | Unannotated protein. | 0.467 |
BU064_04945 | pheT | GCA_001902315_01048 | GCA_001902315_01045 | Unannotated protein. | Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.440 |
BU064_04945 | rpmF | GCA_001902315_01048 | GCA_001902315_01049 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family. | 0.625 |
BU064_04955 | BU064_04940 | GCA_001902315_01050 | GCA_001902315_01047 | Unannotated protein. | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.769 |
BU064_04955 | BU064_04945 | GCA_001902315_01050 | GCA_001902315_01048 | Unannotated protein. | Unannotated protein. | 0.467 |
BU064_04955 | rplU | GCA_001902315_01050 | GCA_001902315_00439 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.771 |
BU064_04955 | rplX | GCA_001902315_01050 | GCA_001902315_02602 | Unannotated protein. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.743 |
BU064_04955 | rpmF | GCA_001902315_01050 | GCA_001902315_01049 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family. | 0.980 |
BU064_11335 | BU064_04940 | GCA_001902315_00937 | GCA_001902315_01047 | Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.828 |
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