BU064_13240 protein (Staphylococcus succinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BU064_13240

Unannotated protein. (504 aa)

Predicted Functional Partners:

queF

0.489

BU064_13250

0.486

BU064_13235

0.455

BU064_10950

0.433

BU064_06035

0.433

BU064_08830

0.432

BU064_03610

0.428

BU064_07685

0.424

BU064_04430

0.424

BU064_02550

0.424

Your Current Organism:

Staphylococcus succinus

NCBI taxonomy Id: 61015
Other names: ATCC 700337, CCUG 43571, DSM 14617, S. succinus, strain AMG-D1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BU064_02550	BU064_03610	GCA_001902315_02628	GCA_001902315_01490	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	Unannotated protein.	0.517
BU064_02550	BU064_04430	GCA_001902315_02628	GCA_001902315_01169	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	Unannotated protein.	0.517
BU064_02550	BU064_06035	GCA_001902315_02628	GCA_001902315_02337	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	Unannotated protein.	0.517
BU064_02550	BU064_07685	GCA_001902315_02628	GCA_001902315_00724	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	Unannotated protein.	0.521
BU064_02550	BU064_08830	GCA_001902315_02628	GCA_001902315_02357	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	Unannotated protein.	0.513
BU064_02550	BU064_10950	GCA_001902315_02628	GCA_001902315_00012	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	Unannotated protein.	0.529
BU064_02550	BU064_13235	GCA_001902315_02628	GCA_001902315_01365	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	Unannotated protein.	0.424
BU064_02550	BU064_13240	GCA_001902315_02628	GCA_001902315_01364	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	Unannotated protein.	0.424
BU064_03610	BU064_02550	GCA_001902315_01490	GCA_001902315_02628	Unannotated protein.	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	0.517
BU064_03610	BU064_04430	GCA_001902315_01490	GCA_001902315_01169	Unannotated protein.	Unannotated protein.	0.517
BU064_03610	BU064_06035	GCA_001902315_01490	GCA_001902315_02337	Unannotated protein.	Unannotated protein.	0.517
BU064_03610	BU064_07685	GCA_001902315_01490	GCA_001902315_00724	Unannotated protein.	Unannotated protein.	0.510
BU064_03610	BU064_10950	GCA_001902315_01490	GCA_001902315_00012	Unannotated protein.	Unannotated protein.	0.517
BU064_03610	BU064_13235	GCA_001902315_01490	GCA_001902315_01365	Unannotated protein.	Unannotated protein.	0.428
BU064_03610	BU064_13240	GCA_001902315_01490	GCA_001902315_01364	Unannotated protein.	Unannotated protein.	0.428
BU064_04430	BU064_02550	GCA_001902315_01169	GCA_001902315_02628	Unannotated protein.	Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.	0.517
BU064_04430	BU064_03610	GCA_001902315_01169	GCA_001902315_01490	Unannotated protein.	Unannotated protein.	0.517
BU064_04430	BU064_06035	GCA_001902315_01169	GCA_001902315_02337	Unannotated protein.	Unannotated protein.	0.594
BU064_04430	BU064_07685	GCA_001902315_01169	GCA_001902315_00724	Unannotated protein.	Unannotated protein.	0.520
BU064_04430	BU064_08830	GCA_001902315_01169	GCA_001902315_02357	Unannotated protein.	Unannotated protein.	0.509